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  "Authors@R": "c(\nperson(\"Aurélie\", \"Siberchicot\", , \"aurelie.siberchicot@univ-lyon1.fr\", role = c(\"cre\", \"aut\"),\ncomment = c(ORCID = \"0000-0002-7638-8318\")),\nperson(\"Milena\", \"Kaag\", , \"milena.kaag.pro@gmail.com\", role = \"aut\"),\nperson(\"Sandrine\", \"Charles\", , \"sandrine.charles@univ-lyon1.fr\", role = \"aut\",\ncomment = c(ORCID = \"0000-0003-4604-0166\")),\nperson(\"UMR5558 LBBE MEPS\", role = c(\"cph\", \"fnd\")),\nperson(\"rhandsontable contributors\", role = c(\"ctb\", \"cph\"),\ncomment = \"For my_rhandsontable function\")\n)",
  "Description": "Web application using 'shiny' for the SSD (Species\nSensitivity Distribution) module of the MOSAIC (MOdeling and\nStAtistical tools for ecotoxICology) platform. It estimates the\nHazardous Concentration for x% of the species (HCx) from\ntoxicity values that can be censored and provides various\nplotting options for a better understanding of the results. See\nour companion paper Kon Kam King et al. (2014)\n<doi:10.48550/arXiv.1311.5772>.",
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