Package: LDcorSV 1.3.3

LDcorSV: Linkage Disequilibrium Corrected by the Structure and the Relatedness

Four measures of linkage disequilibrium are provided: the usual r^2 measure, the r^2_S measure (r^2 corrected by the structure sample), the r^2_V (r^2 corrected by the relatedness of genotyped individuals), the r^2_VS measure (r^2 corrected by both the relatedness of genotyped individuals and the structure of the sample).

Authors:David Desrousseaux, Florian Sandron, Aurélie Siberchicot, Christine Cierco-Ayrolles and Brigitte Mangin

LDcorSV_1.3.3.tar.gz
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LDcorSV_1.3.3.tgz(r-4.4-any)LDcorSV_1.3.3.tgz(r-4.3-any)
LDcorSV_1.3.3.tar.gz(r-4.5-noble)LDcorSV_1.3.3.tar.gz(r-4.4-noble)
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LDcorSV.pdf |LDcorSV.html
LDcorSV/json (API)

# Install 'LDcorSV' in R:
install.packages('LDcorSV', repos = c('https://aursiber.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

7 exports 3.54 score 0 dependencies 25 mentions 12 scripts 202 downloads

Last updated 4 years agofrom:b567fa7010. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 07 2024
R-4.5-winOKSep 07 2024
R-4.5-linuxOKSep 07 2024
R-4.4-winOKSep 07 2024
R-4.4-macOKSep 07 2024
R-4.3-winOKSep 07 2024
R-4.3-macOKSep 07 2024

Exports:Info.LocusInv.proj.matrix.sdpLD.MeasuresMeasure.R2Measure.R2SMeasure.R2VMeasure.R2VS

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
LDcorSVLDcorSV-package LDcorSV
data.testdata.test
Information on lociInfo.Locus
Inv.proj.matrix.sdpInv.proj.matrix.sdp
LD MeasuresLD.Measures
r^2 measureMeasure.R2
r^2_S measureMeasure.R2S
r^2_V measureMeasure.R2V
r^2_VS measureMeasure.R2VS