Package: LDcorSV 1.3.3
LDcorSV: Linkage Disequilibrium Corrected by the Structure and the Relatedness
Four measures of linkage disequilibrium are provided: the usual r^2 measure, the r^2_S measure (r^2 corrected by the structure sample), the r^2_V (r^2 corrected by the relatedness of genotyped individuals), the r^2_VS measure (r^2 corrected by both the relatedness of genotyped individuals and the structure of the sample).
Authors:
LDcorSV_1.3.3.tar.gz
LDcorSV_1.3.3.zip(r-4.5)LDcorSV_1.3.3.zip(r-4.4)LDcorSV_1.3.3.zip(r-4.3)
LDcorSV_1.3.3.tgz(r-4.4-any)LDcorSV_1.3.3.tgz(r-4.3-any)
LDcorSV_1.3.3.tar.gz(r-4.5-noble)LDcorSV_1.3.3.tar.gz(r-4.4-noble)
LDcorSV_1.3.3.tgz(r-4.4-emscripten)LDcorSV_1.3.3.tgz(r-4.3-emscripten)
LDcorSV.pdf |LDcorSV.html✨
LDcorSV/json (API)
| # Install 'LDcorSV' in R: |
| install.packages('LDcorSV', repos = c('https://aursiber.r-universe.dev', 'https://cloud.r-project.org')) |
- data.test - Data.test
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:b567fa7010. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 06 2024 |
| R-4.5-win | OK | Nov 06 2024 |
| R-4.5-linux | OK | Nov 06 2024 |
| R-4.4-win | OK | Nov 06 2024 |
| R-4.4-mac | OK | Nov 06 2024 |
| R-4.3-win | OK | Nov 06 2024 |
| R-4.3-mac | OK | Nov 06 2024 |
Exports:Info.LocusInv.proj.matrix.sdpLD.MeasuresMeasure.R2Measure.R2SMeasure.R2VMeasure.R2VS
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| LDcorSV | LDcorSV-package LDcorSV |
| data.test | data.test |
| Information on loci | Info.Locus |
| Inv.proj.matrix.sdp | Inv.proj.matrix.sdp |
| LD Measures | LD.Measures |
| r^2 measure | Measure.R2 |
| r^2_S measure | Measure.R2S |
| r^2_V measure | Measure.R2V |
| r^2_VS measure | Measure.R2VS |
